Skip to content

feat: spacer, mismatch and filter options for cmd

xhavlik requested to merge jh-cli-args into master

Add the following cmd options:

 -mis,--mismatches <arg>       IR mismatches (as string separated by a comma e.g. '0,1')
 -fdin,--filter-dinucleotide   Use this switch to filter ATATAT sequences.
 -smax,--max-spacer <arg>      Max spacer of IR
 -smin,--min-spacer <arg>      Min spacer of IR

Also ./gradlew build did not run because of non-working tests - do we want to fix them?

Merge request reports