Newer
Older
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
<template>
<div class="container">
<h1>R-loop tracker results</h1>
<pagination ref="pagination" @pageChange="downloadResults">
<checkable-list ref="resultsList">
<th slot="header">Sequence/Analyse name</th>
<th class="text-center" slot="header">
<sort-toggle @sort="sortResults" crit="finished" :current="currentSort">Created</sort-toggle>
</th>
<th class="text-center" slot="header">
<sort-toggle @sort="sortResults" crit="resultCount" :current="currentSort">Results count</sort-toggle>
</th>
<th class="text-center" slot="header">Tags</th>
<th class="text-center" slot="header">Details</th>
<th class="text-center" slot="header">Edit</th>
<th class="text-center" slot="header">Delete</th>
<span slot="item-name" slot-scope="props">
{{ props.item.title }}
</span>
<template slot-scope="props">
<td class="text-right">
<span v-if="props.item.finished">{{ props.item.finished | dateTime }}</span>
<span v-else class="fa fa-spinner animate"></span>
</td>
<td class="text-right">
<span v-if="props.item.finished">
{{ props.item.resultCount | number(0) }}
</span>
</td>
<td>
<b-badge v-for="tag in props.item.tags" :key="tag" pill variant="primary">
{{ tag }}
</b-badge>
</td>
<td class="text-center">
<a :href="downloadCSV(props.item)" v-if="downloadToken" class="btn btn-primary btn-sm">
<span class="fa fa-cube"></span>
</a>
<a :href="downloadBED(props.item)" v-if="downloadToken" class="btn btn-primary btn-sm">
<span class="fa fa-bed"></span>
</a>
<router-link
class="btn btn-primary btn-sm"
:to="{ name: 'results.rloopr.detail', params: { id: props.item.id } }"
>
<span class="fa fa-search"></span>
</router-link>
</td>
<td class="text-center">
<button class="btn btn-primary btn-sm" @click.stop="editResult(props.item)">
<span class="fa fa-edit"></span>
</button>
</td>
<td class="text-center">
<button class="btn btn-danger btn-sm" @click.stop="deleteResult(props.item)">
<span class="fa fa-trash"></span>
</button>
</td>
</template>
<p slot="no-items" class="alert alert-warning">
No results found.
</p>
</checkable-list>
</pagination>
<button type="button" class="btn btn-default" @click="toggleSelection">
<i class="fa fa-refresh"></i> Invert selection
</button>
<button class="btn btn-danger" @click="deleteResults"><i class="fa fa-trash"></i> Delete selected</button>
<modal-confirm ref="confirmModal">Really delete results?</modal-confirm>
<modal-confirm ref="confirmModalMulti">Really delete selected results?</modal-confirm>
<modal-confirm ref="editModal">
<template slot="header">
Modify result
</template>
<result-editor v-if="selectedResult" :result="selectedResult" ref="resultEditor"></result-editor>
<template slot="buttonConfirm">
Save changes
</template>
</modal-confirm>
</div>
</template>
<script>
import SortToggle from '@/components/core/sort-toggle'
import Formatters from '@/formatters'
import CheckableList from '@/components/core/checkable-list'
import Pagination from '@/components/core/pagination'
import ResultEditor from '@/components/core/result-editor'
/**
* list of stored result groups
*/
export default {
data() {
return {
selectedResult: null,
currentSort: {
crit: 'finished',
asc: true,
},
downloadToken: '',
}
},
methods: {
downloadResults() {
this.$http
.get('analyse/rloopr', {
params: {
sort: this.currentSort.crit,
order: this.currentSort.asc ? 'ASC' : 'DESC',
pageSize: this.$refs.pagination.getPageSize(),
pageNumber: this.$refs.pagination.getPageCurrent() - 1,
},
})
.then(response => {
this.$refs.pagination.setPageCount(response.data.page.totalElements)
this.$refs.resultsList.setItems(response.data.items)
this.downloadToken = response.data.downloadToken
})
},
performDelete(result) {
return this.$http.delete('analyse/rloopr/' + result.id)
},
deleteResult(result) {
this.$refs.confirmModal
.display()
.then(() => {
return this.performDelete(result)
})
.then(() => {
this.downloadResults()
})
},
deleteResults() {
this.$refs.confirmModalMulti.display().then(() => {
var checked = this.$refs.resultsList.getCheckedItems()
var promises = []
checked.forEach(result => {
if (result.ui.checked) {
promises.push(this.performDelete(result))
}
})
Promise.all(promises).then(() => {
this.downloadResults()
})
})
},
editResult(result) {
this.selectedResult = result
this.$refs.editModal
.display()
.then(() => {
this.$http
.put('analyse/rloopr/' + result.id + '/tags', {
tags: this.$refs.resultEditor.getTags(),
})
.then(() => {
this.downloadResults()
})
})
.finally(() => {
this.selectedResult = null
})
},
sortResults(info) {
this.currentSort = info
this.downloadResults()
},
toggleSelection() {
this.$refs.resultsList.toggleSelection()
},
downloadCSV(analysisInfo) {
return `${this.$http.defaults.baseURL}analyse/rloopr/${analysisInfo.id}/rloopr.csv`
},
downloadBED(analysisInfo) {
return `${this.$http.defaults.baseURL}analyse/rloopr/${analysisInfo.id}/rloopr.bedgraph`
},
},
mounted() {
this.downloadResults()
},
components: {
'sort-toggle': SortToggle,
'checkable-list': CheckableList,
pagination: Pagination,
'result-editor': ResultEditor,
},
filters: {
dateTime: Formatters.dateTime,
number: Formatters.number,
sequenceName: Formatters.sequenceName,
},
}
</script>