Update .gitlab-ci.yml file

.gitlab-ci.yml

 variables:
   DOCKER_HOST: $DOCKER_HOST_BIO
   PROJECT_NAME: "frontend"
-
+  
 cache:
   key: $CI_COMMIT_REF_NAME
   paths:
     - build/
 
 stages:
+  - analyse
   - build
-  - test
-  - create
-  - read
+  - publish
+  - deploy
 
-job1:
-  stage: build
+# ===========================================================================
+# Stage: analyse
+# ===========================================================================
+
+include:
+  - template: Code-Quality.gitlab-ci.yml
+
+code_quality:
   tags:
     - rancher02
-  script:
-    - echo "Building on rancher02"
+  stage: analyse
+  services: []          # Shut off Docker-in-Docker
+  variables:
+    REPORT_FORMAT: html
+  artifacts:
+    paths: [gl-code-quality-report.html]
 
-job2:
-  stage: test
+# second job has to be run to create both artefacts
+code_quality_json:
   tags:
-    - rancher03
-  script:
-    - echo "Running tests on a worker runner"
+    - rancher02
+  extends: code_quality
+  variables:
+    REPORT_FORMAT: json
+  artifacts:
+    paths: [gl-code-quality-report.json]
 
-create-cache:
-  stage: create
+
+# ===========================================================================
+# Stage: build
+# ===========================================================================
+
+docker-build-latest:
+  stage: build
+  image: docker:git
   tags:
     - cache
+  only:
+    refs:
+      - main
+  except:
+    variables:
+      - $CI_COMMIT_TAG
+  before_script:
+    - mkdir -p build
   script:
+    - docker build -t $DOCKER_NAMESPACE/$PROJECT_NAME:latest .
+    - docker save -o build/image.tar $DOCKER_NAMESPACE/$PROJECT_NAME:latest
+
+
+docker-build-tag:
+  stage: build
+  image: docker:git
+  only:
+    variables:
+      - $CI_COMMIT_TAG
+  before_script:
     - mkdir -p build
-    - echo "Hello World" > build/hello.txt
-    - echo "Cache file created."
+  script:
+    - docker build -t $DOCKER_NAMESPACE/$PROJECT_NAME:$CI_COMMIT_TAG .
+    - docker save -o build/image.tar $DOCKER_NAMESPACE/$PROJECT_NAME:$CI_COMMIT_TAG
+  artifacts:
+    paths:
+      - build/image.tar
+    expire_in: 10 mins  # Optional: Set an expiration time for the artifact
+
+
+# ===========================================================================
+# Stage: test
+#
+# TODO
+# ===========================================================================
+
 
-read-cache:
-  stage: read
+
+# ===========================================================================
+# Stage: publish
+# ===========================================================================
+
+docker-push-latest:
+  stage: publish
+  image: docker
   tags:
     - cache
+  only:
+   - main
+  before_script:
+    - docker login -u $DOCKER_USERNAME -p $DOCKER_TOKEN $DOCKER_REGISTRY
+  script:
+    - docker load -i build/image.tar
+    # - docker push $DOCKER_NAMESPACE/$PROJECT_NAME:latest
+
+docker-push-tag:
+  stage: publish
+  image: docker
+  only:
+    variables:
+      - $CI_COMMIT_TAG
+  before_script:
+    - docker login -u $DOCKER_USERNAME -p $DOCKER_TOKEN $DOCKER_REGISTRY
+  script:
+    - docker load -i build/image.tar
+    - docker push $DOCKER_NAMESPACE/$PROJECT_NAME:$CI_COMMIT_TAG
+
+
+# ===========================================================================
+# Stage: deploy
+# ===========================================================================
+
+deploy-bioinformatika.pef.mendelu.cz:
+  stage: deploy
+  only:
+    - main
+  script:
+    - cp .env /home/bioinformatics/
+    - cd /home/bioinformatics/
+    - docker-compose config > docker-swarm.yml
+#    - docker stack deploy -c docker-compose.yml test_stack
+#  after_script:
+#    - docker system prune -f
+
+deploy-bioinformatics.ibp.cz:
+  stage: deploy
+  only:
+    variables:
+      - $CI_COMMIT_TAG
   script:
-    - if [ -f build/hello.txt ]; then
-        echo "Reading cached file:";
-        cat build/hello.txt;
-      else
-        echo "Cached file not found.";
-      fi
+    - scp .env root@bioinformatics.ibp.cz:/opt/
+    - scp docker-compose.yml root@bioinformatics.ibp.cz:/opt/
+    - ssh root@bioinformatics.ibp.cz "cd /opt && export $(xargs < .env) && docker stack deploy dna-analyser -c docker-compose.yml"